EBSeqHMM (version 1.6.0)

LikefunNBHMM: Likelihood function of the Beta-Negative Binomial HMM Model

Description

Likelihood function of the Beta-Negative Binomial HMM Model

Usage

LikefunNBHMM(ParamPool, InputPool)

Arguments

ParamPool

The parameters that will be estimated in EM.

InputPool

The control parameters that will not be estimated in EM

Value

optimal estimates of the parameters of interest

Details

The likelihood function of the Beta-Negative Binomial HMM model used in EBSeqHMM. EBSeqHMM uses optim() function to obtain the optimal estimates that minimizes the likelihood.

Examples

data(GeneExampleData)
tmp <- GeneExampleData[1:10,]
In <- list(tmp,1,5,10,3,tmp,rep(1,15),as.factor(rep(1:5,each=3)), 10,cbind(rep(.5,10),rep(1,10),rep(2,10)))
Start <- c(1,1)
LikefunNBHMM(Start,In)