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R package: EDASeq

This is the developer version of the Bioconductor package EDASeq. Install in R as:

source("http://bioconductor.org/biocLite.R")
biocLite("EDASeq")

Status

  • Bioc-release
  • Bioc-devel:
  • Travis CI:

Issues and bug reports

Please use https://github.com/drisso/EDASeq/issues to submit issues, bug reports, and comments.

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Version

Version

2.6.2

License

Artistic-2.0

Issues

7

Pull Requests

0

Stars

4

Forks

1

Maintainer

Davide Risso

Last Published

February 15th, 2017

Functions in EDASeq (2.6.2)

withinLaneNormalization-methods

Methods for Function withinLaneNormalization in Package EDASeq
plotQuality-methods

Methods for Function plotQuality in Package EDASeq
betweenLaneNormalization-methods

Methods for Function betweenLaneNormalization in Package EDASeq
boxplot-methods

Methods for Function boxplot in Package EDASeq
biasBoxplot-methods

Methods for Function biasBoxplot in Package EDASeq
getGeneLengthAndGCContent

Get gene length and GC-content
SeqExpressionSet-class

"SeqExpressionSet" class for collections of short reads
MDPlot-methods

Methods for Function MDPlot in Package EDASeq
meanVarPlot-methods

Methods for Function meanVarPlot in Package EDASeq
yeastGC

GC-content of S. Cerevisiae genes
newSeqExpressionSet

Function to create a new SeqExpressionSet object.
plot-methods

Methods for Function plot in Package EDASeq
plotNtFrequency-methods

Methods for Function plotNtFrequency in Package EDASeq
yeastLength

Length of S. Cerevisiae genes
plotRLE-methods

Methods for Function plotRLE in Package EDASeq
EDASeq-package

Exploratory Data Analysis and Normalization for RNA-Seq data
plotPCA-methods

Methods for Function plotPCA in Package EDASeq
biasPlot-methods

Methods for Function biasPlot in Package EDASeq
barplot-methods

Methods for Function barplot in Package EDASeq