Usage
plotConcQ(eList, qUnit = 2, tinyPlot = FALSE, logScale = FALSE,
concMax = NA, concMin = NA, printTitle = TRUE, cex = 0.8,
cex.axis = 1.1, cex.main = 1.1, rmSciX = FALSE, rmSciY = FALSE,
customPar = FALSE, col = "black", lwd = 1, ...)
Arguments
eList
named list with at least the Sample and INFO dataframes
qUnit
object of qUnit class printqUnitCheatSheet
, or numeric represented the short code, or character representing the descriptive name. tinyPlot
logical variable, if TRUE plot is designed to be plotted small as part of a multipart figure, default is FALSE.
logScale
logical if TRUE x and y plotted in log axis
concMax
number specifying the maximum value to be used on the vertical axis, default is NA (which allows it to be set automatically by the data)
concMin
numeric value for lower limit on concentration shown on the vertical log graph, default is NA
(which causes the lower limit to be set automatically, based on the data). This value is ignored for linear scales, using 0 as the minimum value for the concent
printTitle
logical variable if TRUE title is printed, if FALSE title is not printed (this is best for a multi-plot figure)
cex
numerical value giving the amount by which plotting symbols should be magnified
cex.axis
magnification to be used for axis annotation relative to the current setting of cex
cex.main
magnification to be used for main titles relative to the current setting of cex
rmSciX
logical defaults to FALSE, changes x label from scientific to fixed
rmSciY
logical defaults to FALSE, changes y label from scientific to fixed
customPar
logical defaults to FALSE. If TRUE, par() should be set by user before calling this function
(for example, adjusting margins with par(mar=c(5,5,5,5))). If customPar FALSE, EGRET chooses the best margins depending on tinyPlot.
col
color of points on plot, see ?par 'Color Specification'
...
arbitrary graphical parameters that will be passed to genericEGRETDotPlot function (see ?par for options)