yeast_nbinomTest_results: Pre-processed Yeast sample RNA-seq data
Description
Pre-processed Yeast sample RNA-seq data, obtained from the website:
http://cgrlucb.wikispaces.com/Spring+2012+DESeq+Tutorial
For more information, please contact the author of the webpage.
The content from the tutorial's webpage is licensed as follows:
Contributions to http://cgrlucb.wikispaces.com/ are licensed under a Creative Commons Attribution Share-Alike 3.0 License. Creative Commons Attribution Share-Alike 3.0 License.
Usage
yeast_nbinomTest_results
Format
An 8 column table defined as such:
- id --- the Gene ID reprented by the row
- baseMean --- mean estimated from both conditions (with normalization by size factors)
- baseMeanA --- mean estimated from the first condition specified as an argument to nbinomTest (in this case, “M”)
- baseMeanB --- mean estimated from the second condition (in this case, “WE”)
- foldChange --- ratio of the estimated means
- log2FoldChange --- log2 of the ratio
- pval --- uncorrected p-value from the negative binomial test
- padj --- p-value adjusted for multiple testing using Benjamini-Hochberg to estimate the false discovery rate
- resVarA --- dispersion estimated from the first condition
- resVarB --- dispersion estimated from the second condition
Source
http://cgrlucb.wikispaces.com/Spring+2012+DESeq+Tutorial