Create a text report with the significant probesets for each significant GO category from the result of a call to 'hyperGTest'
goReport(hgOver, fileout = "report.txt", type = c("CC", "MF", "BP"),
pack.annot, pvalue = 0.05, categorySize=1)
result from a call to 'hyperGTest'
name of txt file, by default "report.txt"
type of GO categories, by default = c("CC", "MF", "BP")
the annotation package to use
cutoff for significant pvalue, by default 0.05
integer, minimum size for category, by default = 1
Txt report with the results of a call to 'hyperGTest'
goReport
needs packages GOstats
and GO.db
from Bioconductor.