EMA (version 1.4.7)

htmlresult: Html report from the result of the 'hyperGTest' function

Description

Create a html report from the result of a call to 'hyperGTest'

Usage

htmlresult(hgOver, filename, app = FALSE, categorySize = 1, pvalue=0.05)

Arguments

hgOver

result from a call to 'hyperGTest'

filename

file name with path for html result

app

if TRUE, overwrite the pre-existing html report file, by default FALSE

categorySize

an integer, minimum size for category, by default =1

pvalue

the pvalue threshold for significance, default =0.05

Value

An html report with the result from a call to 'hyperGTest'

Id, pvalue, Odd Ratio, Expected Count, Count, Size and Term are returned

Details

htmlresult needs packages GOstats and GO.db from Bioconductor.

See Also

hyperGTest,runHyperGO