keggReport

result from a call to 'hyperGTest'

hgOver

name of txt file, by default "report.txt"

fileout

pack.annot

cutoff for significant pvalue, by default 0.05

pvalue

Create a txt report with the significant probesets for each significant KEGG pathway from the result of a call to 'hyperGTest'

internal

print

We propose both a clear analysis strategy and a selection of tools to investigate microarray gene expression data. The most usual and relevant existing R functions were discussed, validated and gathered in an easy-to-use R package (EMA) devoted to gene expression microarray analysis. These functions were improved for ease of use, enhanced visualisation and better interpretation of results.

keggReport: Text report from the result of the 'hyperGTest' function for KEGG pathway analysis

Description

Usage

Arguments

Value

Details

See Also