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Eagle (version 2.5)

Multiple Locus Association Mapping on a Genome-Wide Scale

Description

An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.

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Version

Install

install.packages('Eagle')

Monthly Downloads

428

Version

2.5

License

GPL-3

Maintainer

Andrew George

Last Published

November 30th, 2021

Functions in Eagle (2.5)

ReadZmat

Read Z matrix
FPR4AM

Set the false positive rate for AM
Eagle-package

Eagle for Genome-wide Association Mapping
PlotAM

Visualisation of multiple locus association mapping results
SummaryAM

Summary of multiple locus association mapping results
AM

multiple-locus Association Mapping
ReadMarker

Read marker data.
OpenGUI

Browser-based Graphical User Interface
ReadMap

Read map file
ReadPheno

Read phenotype file