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genotyping: Genotyping

Description

Generation of genotypes associated with a Genome object.

Usage

genotyping(genomeObj)

Value

A list of matrices describing genotypes in rows.

Arguments

genomeObj

a Genome object.

Author

Ehouarn Le Faou

Details

The output genotypes are described as a list of three matrices. A genotype consists of two diploid haplotypes (first two matrices) and one haploid haplotype (third matrix), which are read at the same row number on all three matrices.