Generation of haplotypes associated with a Genome
object.
haplotyping(genomeObj)
A list of matrices describing haplotypes in rows.
a Genome
object
Ehouarn Le Faou
The generated haplotypes are output as a list of three enumeration in the form of matrices of alleles (each row corresponding to an haplotype, each column to a locus). The first enumeration corresponds to haplotypes considering only haploid loci, the second only diploid loci and the third all loci (with two matrices, 1 for haploid loci, 1 for diploid loci).