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Ease (version 0.1.2)

haplotyping: Haplotyping

Description

Generation of haplotypes associated with a Genome object.

Usage

haplotyping(genomeObj)

Value

A list of matrices describing haplotypes in rows.

Arguments

genomeObj

a Genome object

Author

Ehouarn Le Faou

Details

The generated haplotypes are output as a list of three enumeration in the form of matrices of alleles (each row corresponding to an haplotype, each column to a locus). The first enumeration corresponds to haplotypes considering only haploid loci, the second only diploid loci and the third all loci (with two matrices, 1 for haploid loci, 1 for diploid loci).