initialize,MutationMatrix-method

Initialize method for the <code>MutationMatrix</code> class

Implementation in a simple and efficient way of fully customisable population genetics simulations,
considering multiple loci that have epistatic interactions. Specifically suited to the modelling of
multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible
to simulate purely diploid (or purely haploid) genetic models.
Examples of models that can be simulated with Ease are numerous, for example models of genetic
incompatibilities as presented by Marie-Orleach et al. (2022) <doi:10.1101/2022.07.25.501356>.
Many others are conceivable, although few are actually explored, Ease having been developed
in particular to provide a solution so that these kinds of models can be simulated simply.

Ehouarn Faou

Ease

Simulating Explicit Population Genetics Models

initialize,MutationMatrix-method function

<dl><dt>.Object</dt>
<dd>a <code>MutationMatrix</code> object</dd>
<dt>genomeObj</dt>
<dd>a <code>Genome</code> object</dd>
<dt>mutHapLoci</dt>
<dd>a list of haploid locus by locus allelic mulation matrices.</dd>
<dt>mutDipLoci</dt>
<dd>a list of diploid locus by locus allelic mulation matrices.</dd></dl>

Arguments

Author

Initialize method for the MutationMatrix class — initialize,MutationMatrix-method

<dl>

<dt>.Object</dt>
<dd>a <code>MutationMatrix</code> object</dd>


<dt>genomeObj</dt>
<dd>a <code>Genome</code> object</dd>


<dt>mutHapLoci</dt>
<dd>a list of haploid locus by locus allelic mulation matrices.</dd>


<dt>mutDipLoci</dt>
<dd>a list of diploid locus by locus allelic mulation matrices.</dd>

</dl>

initialize,MutationMatrix-method: Initialize method for the `MutationMatrix` class

Description

Usage

Value

Arguments

Author