mutMatRates

Generation of a mutation matrix from the allele enumeration vector of a loci
and the forward and backward mutation rates.

Implementation in a simple and efficient way of fully customisable population genetics simulations,
considering multiple loci that have epistatic interactions. Specifically suited to the modelling of
multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible
to simulate purely diploid (or purely haploid) genetic models.
Examples of models that can be simulated with Ease are numerous, for example models of genetic
incompatibilities as presented by Marie-Orleach et al. (2022) <doi:10.1101/2022.07.25.501356>.
Many others are conceivable, although few are actually explored, Ease having been developed
in particular to provide a solution so that these kinds of models can be simulated simply.

Ehouarn Faou

Ease

Simulating Explicit Population Genetics Models

mutMatRates function

<dl><dt>alleles</dt>
<dd>allele enumeration vector of a locus</dd>
<dt>forwardMut</dt>
<dd>forward mutation rate</dd>
<dt>backwardMut</dt>
<dd>backward mutation rate</dd></dl>

Arguments

Author

Mutation matrix from rates — mutMatRates

<dl>

<dt>alleles</dt>
<dd>allele enumeration vector of a locus</dd>


<dt>forwardMut</dt>
<dd>forward mutation rate</dd>


<dt>backwardMut</dt>
<dd>backward mutation rate</dd>

</dl>

mutMatRates: Mutation matrix from rates

Description

Usage

Value

Arguments

Author

Details