outFunct

Allow to produce a custom output for a simulation.

Implementation in a simple and efficient way of fully customisable population genetics simulations,
considering multiple loci that have epistatic interactions. Specifically suited to the modelling of
multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible
to simulate purely diploid (or purely haploid) genetic models.
Examples of models that can be simulated with Ease are numerous, for example models of genetic
incompatibilities as presented by Marie-Orleach et al. (2022) <doi:10.1101/2022.07.25.501356>.
Many others are conceivable, although few are actually explored, Ease having been developed
in particular to provide a solution so that these kinds of models can be simulated simply.

Ehouarn Faou

Ease

Simulating Explicit Population Genetics Models

outFunct function

<dl><dt>pop</dt>
<dd>list of some characteristics of the population :
- customOutput : list of all previous savings
- gen : generation
- freqGeno : list of genotypic frequency matrices (matrix 1 x # genotypes).
The list is constructed as follows: if the population is hermaphroditic it
has only one element "ind", if the population is dioecious it has three
elements, "female", "male" and "ind" which correspond respectively to
the genotypic frequencies of the females, the males and the average of
the two (assuming a sex ratio of 50:50).
- freqHaplo : list of genotypic frequency matrices (matrix 1 x # haplotypes).
The list is constructed in the same way as for genotypic frequencies (see
above).
- freqAlleles : list of allelic frequency matrices (matrix 1 x # alleles).
The list is constructed in the same way as for genotypic frequencies (see
above).</dd></dl>

Arguments

Author

Custom output function — outFunct

<dl>

<dt>pop</dt>
<dd>list of some characteristics of the population :
- customOutput : list of all previous savings
- gen : generation
- freqGeno : list of genotypic frequency matrices (matrix 1 x # genotypes).
The list is constructed as follows: if the population is hermaphroditic it
has only one element "ind", if the population is dioecious it has three
elements, "female", "male" and "ind" which correspond respectively to
the genotypic frequencies of the females, the males and the average of
the two (assuming a sex ratio of 50:50).
- freqHaplo : list of genotypic frequency matrices (matrix 1 x # haplotypes).
The list is constructed in the same way as for genotypic frequencies (see
above).
- freqAlleles : list of allelic frequency matrices (matrix 1 x # alleles).
The list is constructed in the same way as for genotypic frequencies (see
above).</dd>

</dl>

outFunct: Custom output function

Description

Usage

Arguments

Author

Details