EnvStats (version 2.4.0)

ciNparConfLevel: Compute Confidence Level Associated with a Nonparametric Confidence Interval for a Quantile

Description

Compute the confidence level associated with a nonparametric confidence interval for a quantile, given the sample size and order statistics associated with the lower and upper bounds.

Usage

ciNparConfLevel(n, p = 0.5, lcl.rank = ifelse(ci.type == "upper", 0, 1), 
    n.plus.one.minus.ucl.rank = ifelse(ci.type == "lower", 0, 1),  
    ci.type = "two.sided")

Arguments

n

numeric vector of sample sizes. Missing (NA), undefined (NaN), and infinite (Inf, -Inf) values are not allowed.

p

numeric vector of probabilities specifying which quantiles to consider for the sample size calculation. All values of p must be between 0 and 1. The default value is p=0.5.

lcl.rank, n.plus.one.minus.ucl.rank

numeric vectors of non-negative integers indicating the ranks of the order statistics that are used for the lower and upper bounds of the confidence interval for the specified quantile(s). When lcl.rank=1 that means use the smallest value as the lower bound, when lcl.rank=2 that means use the second to smallest value as the lower bound, etc. When n.plus.one.minus.ucl.rank=1 that means use the largest value as the upper bound, when n.plus.one.minus.ucl.rank=2 that means use the second to largest value as the upper bound, etc. A value of 0 for lcl.rank indicates no lower bound (i.e., -Inf) and a value of 0 for n.plus.one.minus.ucl.rank indicates no upper bound (i.e., Inf). When ci.type="upper" then lcl.rank is set to 0 by default, otherwise it is set to 1 by default. When ci.type="lower" then n.plus.one.minus.ucl.rank is set to 0 by default, otherwise it is set to 1 by default.

ci.type

character string indicating what kind of confidence interval to compute. The possible values are "two-sided" (the default), "lower", and "upper".

Value

A numeric vector of confidence levels.

Details

If the arguments n, p, lcl.rank, and n.plus.one.minus.ucl.rank are not all the same length, they are replicated to be the same length as the length of the longest argument.

The help file for eqnpar explains how nonparametric confidence intervals for quantiles are constructed and how the confidence level associated with the confidence interval is computed based on specified values for the sample size and the ranks of the order statistics used for the bounds of the confidence interval.

References

See the help file for eqnpar.

See Also

eqnpar, ciNparN, plotCiNparDesign.

Examples

# NOT RUN {
  # Look at how the confidence level of a nonparametric confidence interval 
  # increases with increasing sample size for a fixed quantile:

  seq(5, 25, by = 5) 
  #[1] 5 10 15 20 25 

  round(ciNparConfLevel(n = seq(5, 25, by = 5), p = 0.9), 2) 
  #[1] 0.41 0.65 0.79 0.88 0.93

  #---------

  # Look at how the confidence level of a nonparametric confidence interval 
  # decreases as the quantile moves away from 0.5:

  seq(0.5, 0.9, by = 0.1) 
  #[1] 0.5 0.6 0.7 0.8 0.9

  round(ciNparConfLevel(n = 10, p = seq(0.5, 0.9, by = 0.1)), 2) 
  #[1] 1.00 0.99 0.97 0.89 0.65

  #==========

  # Reproduce Example 21-6 on pages 21-21 to 21-22 of USEPA (2009).  
  # Use 12 measurements of nitrate (mg/L) at a well used for drinking water 
  # to determine with 95% confidence whether or not the infant-based, acute 
  # risk standard of 10 mg/L has been violated.  Assume that the risk 
  # standard represents an upper 95'th percentile limit on nitrate 
  # concentrations.  So what we need to do is construct a one-sided 
  # lower nonparametric confidence interval for the 95'th percentile 
  # that has associated confidence level of no more than 95%, and we will 
  # compare the lower confidence limit with the MCL of 10 mg/L.  
  #
  # The data for this example are stored in EPA.09.Ex.21.6.nitrate.df.

  # Look at the data:
  #------------------

  EPA.09.Ex.21.6.nitrate.df
  #   Sampling.Date       Date Nitrate.mg.per.l.orig Nitrate.mg.per.l Censored
  #1      7/28/1999 1999-07-28                  <5.0              5.0     TRUE
  #2       9/3/1999 1999-09-03                  12.3             12.3    FALSE
  #3     11/24/1999 1999-11-24                  <5.0              5.0     TRUE
  #4       5/3/2000 2000-05-03                  <5.0              5.0     TRUE
  #5      7/14/2000 2000-07-14                   8.1              8.1    FALSE
  #6     10/31/2000 2000-10-31                  <5.0              5.0     TRUE
  #7     12/14/2000 2000-12-14                    11             11.0    FALSE
  #8      3/27/2001 2001-03-27                  35.1             35.1    FALSE
  #9      6/13/2001 2001-06-13                  <5.0              5.0     TRUE
  #10     9/16/2001 2001-09-16                  <5.0              5.0     TRUE
  #11    11/26/2001 2001-11-26                   9.3              9.3    FALSE
  #12      3/2/2002 2002-03-02                  10.3             10.3    FALSE

  # Determine what order statistic to use for the lower confidence limit
  # in order to achieve no more than 95% confidence.
  #---------------------------------------------------------------------

  conf.levels <- ciNparConfLevel(n = 12, p = 0.95, lcl.rank = 1:12, 
    ci.type = "lower")
  names(conf.levels) <- 1:12

  round(conf.levels, 2)
  #   1    2    3    4    5    6    7    8    9   10   11   12 
  #1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.98 0.88 0.54 
  
  # Using the 11'th largest observation for the lower confidence limit 
  # yields a confidence level of 88%.  Using the 10'th largest 
  # observation yields a confidence level of 98%.  The example in 
  # USEPA (2009) uses the 10'th largest observation.
  #
  # The 10'th largest observation is 11 mg/L which exceeds the 
  # MCL of 10 mg/L, so there is evidence of contamination.
  #--------------------------------------------------------------------

  with(EPA.09.Ex.21.6.nitrate.df, 
    eqnpar(Nitrate.mg.per.l, p = 0.95, ci = TRUE, 
      ci.type = "lower", lcl.rank = 10))

  #Results of Distribution Parameter Estimation
  #--------------------------------------------
  #
  #Assumed Distribution:            None
  #
  #Estimated Quantile(s):           95'th %ile = 22.56
  #
  #Quantile Estimation Method:      Nonparametric
  #
  #Data:                            Nitrate.mg.per.l
  #
  #Sample Size:                     12
  #
  #Confidence Interval for:         95'th %ile
  #
  #Confidence Interval Method:      exact
  #
  #Confidence Interval Type:        lower
  #
  #Confidence Level:                98.04317%
  #
  #Confidence Limit Rank(s):        10 
  #
  #Confidence Interval:             LCL =  11
  #                                 UCL = Inf

  #==========

  # Clean up
  #---------
  rm(conf.levels)
# }