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EpiILM (version 1.5.2)

Spatial and Network Based Individual Level Models for Epidemics

Description

Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).

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Install

install.packages('EpiILM')

Monthly Downloads

304

Version

1.5.2

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

6

Forks

2

Maintainer

Waleed Almutiry

Last Published

September 30th, 2020

Functions in EpiILM (1.5.2)

epiBR0

Basic reproduction number (R0)
as.epidata

Discrete Time level information of an Epidemic
epidata

Simulates epidemic for the specified model type and parameters
epidic

Deviance Information Criterion (DIC)
plot.epimcmc

Plot the output of epimcmc object
plot.pred.epi

S3 method to provide plots of posterior predictive check.
epimcmc

Monte Carlo Simulation
plot.epidata

S3 method to provide some graphics of epidemic.
epilike

Calculates the log likelihood
EpiILM-package

EpiILM: EpiILM
pred.epi

Posterior predictive check.
tswv

Tomato Spotted Wilt Virus (TSWV) data
summary.epimcmc

Summary method for epimcmc objects