These functions parameterize the base deterministic
compartmental models solved using the dcm
function.
mod_SI_1g_cl(t, t0, parms)mod_SI_1g_op(t, t0, parms)
mod_SI_2g_cl(t, t0, parms)
mod_SI_2g_op(t, t0, parms)
mod_SIR_1g_cl(t, t0, parms)
mod_SIR_1g_op(t, t0, parms)
mod_SIR_2g_cl(t, t0, parms)
mod_SIR_2g_op(t, t0, parms)
mod_SIS_1g_cl(t, t0, parms)
mod_SIS_1g_op(t, t0, parms)
mod_SIS_2g_cl(t, t0, parms)
mod_SIS_2g_op(t, t0, parms)
Time vector, passed into model function internally through
dcm via the control settings in
control.dcm.
Initial conditions for model, passed into model function internally
through dcm via the initial conditions in
init.dcm.
Model parameters, passed into model function internally through
dcm via the parameter settings in
param.dcm.
This help page shows the names of all the base deterministic compartmental
model functions supported in EpiModel. Base models are those already
programmed interally within the software. The model functions may be printed
to see their internal structure, either directly on the console or by using
the print.mod argument in control.dcm.
The naming convention for the models listed here follows the format:
mod_<disease type>_<number of groups>_<vital dynamics>. The supported
disease types are SI, SIS, and SIR; the number of groups are 1 or 2; and the
vital dynamic options are closed (fixed population composition) or open (with
arrivals and departures).