This function returns a data.frame with a discordant
edgelist, defined as the set of edges in which the status of the
two partners is one susceptible and one infected.
discord_edgelist(dat, at, network = 1, infstat = "i", include.network = FALSE)This function returns a data.frame with the following columns:
time: time step queried.
sus: ID number for the susceptible partner.
inf: ID number for the infectious partner.
The output from this function is added to the transmission data.frame
object that is requested as output in netsim simulations with
the save.trans=TRUE argument.
Main netsim_dat object containing a networkDynamic
object and other initialization information passed from
netsim.
Current time step.
In case of models with multiple networks, the network to pull
the current edgelist from. Default of network = 1.
Character vector of disease status values that are considered infectious, defining the SI pairs.
Should the network value be included as the
final column of the discordant edgelist?
This internal function works within the parent infection.net
function to pull the current edgelist from the dynamic network object, look
up the disease status of the head and tails on the edge, and subset the list
to those edges with one susceptible and one infected node.
EpiModel v2.0.3 extended the function by allowing flexibility in the
definition what disease status counts as infectious, with the infstat
parameter. For extension models with multiple infectious states, this can be
a vector of length greater than 1: infstat = c("i", "a").
netsim, infection.net