plot.transmat

Plots the transmission matrix tree from from <code>get_transmat</code>
in one of three styles: a phylogram, a directed network, or
a transmission timeline.

Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features an API for
extending these templates to address novel scientific research aims. Full
methods for EpiModel are detailed in Jenness et al. (2018, <doi:10.18637/jss.v084.i08>).

Samuel Jenness

EpiModel

Mathematical Modeling of Infectious Disease Dynamics

Steven M. Goodreau

Martina Morris

Adrien Le Guillou

Chad Klumb

Skye Bender-deMoll

plot.transmat function

<dl><dt>x</dt>
<dd>A <code>transmat</code> object to be plotted.</dd>
<dt>style</dt>
<dd>Character name of plot style. One of <code>"phylo"</code>,
<code>"network"</code>, or <code>"transmissionTimeline"</code>.</dd>
<dt>...</dt>
<dd>Additional plot arguments to be passed to lower-level plot
functions (<code>plot.network</code>, <code>plot.phylo</code>, or
<code>transmissionTimeline</code>).</dd></dl>

Arguments

Plot transmat Infection Tree in Three Styles — plot.transmat

<dl>

<dt>x</dt>
<dd>A <code>transmat</code> object to be plotted.</dd>


<dt>style</dt>
<dd>Character name of plot style. One of <code>"phylo"</code>,
<code>"network"</code>, or <code>"transmissionTimeline"</code>.</dd>


<dt>...</dt>
<dd>Additional plot arguments to be passed to lower-level plot
functions (<code>plot.network</code>, <code>plot.phylo</code>, or
<code>transmissionTimeline</code>).</dd>

</dl>

plot.transmat: Plot transmat Infection Tree in Three Styles

Description

Usage

Arguments

Details

See Also