Eunomia (version 2.0.0)

extractLoadData: Extract the Eunomia data files and load into a database Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the same directory as the .ZIP file.

Description

Extract the Eunomia data files and load into a database Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the same directory as the .ZIP file.

Usage

extractLoadData(
  from,
  to,
  dbms = "sqlite",
  cdmVersion = "5.3",
  inputFormat = "csv",
  verbose = FALSE
)

Value

No return value, called to load archive into a database file.

Arguments

from

The path to the .ZIP file that contains the csv CDM source files

to

The path to the .sqlite or .duckdb file that will be created

dbms

The file based database system to use: 'sqlite' (default) or 'duckdb'

cdmVersion

The version of the OMOP CDM that are represented in the archive files.

inputFormat

The format of the files expected in the archive. (csv or parquet)

verbose

Provide additional logging details during execution.

See Also

downloadEunomiaData

Examples

if (FALSE) {
extractLoadData("c:/strategusData/GiBleed_5.3.zip")
}