Call somatic variants between healthy and disease tissues.
somatic.CNV.call(normal, tumor, prop.tumor = 1, chromosome, start, end, names)An ExomeDepth object with CNV calls.
Read count data (numeric vector) for the normal tissue.
Read count data (numeric vector) for the tumor.
Proportion of the tumour DNA in the tumour sample (between 0 and 1, and less than 1 if there is normal tissue in the tumor sample).
Chromosome information for the bins.
Start position of each bin (typically in bp).
End position of each bin.
Names for each bin (tyically exon names but any way to track the bins will do).
Use read depth data from targeted sequencing experiments to call CNV between a tumor and matched healthy tissue. This is an experimental function at this stage.