FARDEEP (version 1.0.1)

tuningBIC: Tuning parameter k in function alts using Bayesian Information Criterion (BIC) with some adjustment.

Description

Tuning parameter k in function alts using Bayesian Information Criterion (BIC) with some adjustment.

Usage

tuningBIC(x, y, alpha1 = 0.1, alpha2 = 1.5, up = 10, low = 1,
  nn = TRUE, intercept = TRUE, lognorm = TRUE)

Arguments

x

input matrix of predictors with n rows and p columns.

y

input vector of dependent variable with length n.

alpha1

parameter used to adjust the upper bound of outliers. Take value from 0 to 1, default 0.1.

alpha2

parameter used to adjust the lower bound of outliers. Take value larger than 1, default 1.5.

up

upper bound of parameter k in function alts, default 10.

low

lower bound of parameter k in function alts, default 1.

nn

whether coefficients are non-negative, default TRUE.

intercept

whether intercept is included in model, default TRUE.

lognorm

whether noise is log-normal distributed, default TRUE.

Value

k: tuning result of parameter k for function alts.

References

Yuning Hao, Ming Yan, Blake R. Heath, Yu L. Lei and Yuying Xie. Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed Squares. <doi:10.1101/358366>

Examples

# NOT RUN {
library(FARDEEP)
samp = sample.sim(n = 500, p = 20, sig = 1, a1 = 0.1, a2 = 0.2, nn = TRUE, intercept = TRUE)
k = tuningBIC(samp$x, samp$y, lognorm = FALSE)
# }