FemModShow:
Generates a figure showing the inferred FEM module(s)
Description
This function generates a network representation of an inferred FEM module.
Usage
FemModShow(mod, name, fem.o, mode="Integration")
Arguments
mod
the module of the FEM result object for which a figure is to be generated
name
the name for the output figure file
fem.o
FEM result object generated by DoFEMbi, DoEpiMod, or DoExpMod
mode
There are three modes: "Integration","Epi","Epx". "Integration" means the module is from DoFEMbi, "Epi" means the module is from DoEpiMod, "Exp" means the module is from DoExpMod.
Value
An igraph object representing the module. At the same time, the module
graph is generated and saved as a "X.pdf" file with "X" the name given
in the argument to the function.
Details
References
A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control. Jiao Y, Widschwendter M, Teschendorff AE. Bioinformatics. 2014;30(16):2360-2366