probe450kfemanno

A list of entries giving various annotation information of
  the 450k probes

datasets

The FEM package performs a systems-level integrative analysis of DNA methylation and gene expression data. It seeks modules of functionally related genes which exhibit differential promoter DNA methylation and differential expression, where an inverse association between promoter DNA methylation and gene expression is assumed. For full details, see Jiao et al Bioinformatics 2014.

Andrew E Teschendorff

Identification of Functional Epigenetic Modules

probe450kfemanno function

Format

Source

Processed annotation of Illumina 450k probes for use in the FEM algorithm.

a vector of 0's and 1's indicating whether a probe maps to a CpG (1) or not (0).

typeC

a vector of 0's and 1's indicating whether a probe maps to a CGI (1) or not (0).

a vector of 1's and 2's, specifying design type of probe (1 = type I, 2 = type II).

design

probeID

an integer vector specifying which gene region the
probe maps to. Regions are annotated as follows: 1=TSS1500, 2=TSS200, 3=5'UTR, 4=1stExon, 5=gene body, 6=3'UTR. Probes with ambiguous mappings are assigned an
NA.

GeneGroup

mapping of 450k probes to Entrez Gene ID.

probe450kfemanno: Processed annotation of Illumina 450k probes for use in the FEM algorithm.

Description

Usage

Arguments

Value

Source

Details

References