geneWidth

geneWidth,pgFull-method

geneWidth,pgLM-method

geneWidth,pgSlim-method

object


This method extracts the width (i.e. number of residues) of each gene in
the pangenome.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

geneWidth function

<ul>
<li> <code>pgLM</code>: Get gene width for pgLM and subclasses </li>
<li> <code>pgFull</code>: Get gene widths for pgFull and subclasses </li>
<li> <code>pgSlim</code>: Throws error for pgSlim
</li>
</ul>

Methods (by class)

This method extracts the width (i.e. number of residues) of each gene in
the pangenome.

geneWidth: Get the sequence length of each gene

Description

Usage

Arguments

Value

Methods (by class)

Examples