nGeneGroups

nGeneGroups,pgVirtual-method

object


This method gives the number of different gene groups in the object.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

nGeneGroups function

<ul>
<li> <code>pgVirtual</code>: The number of gene groups in the pangenome for
pgVirtual subclasses
</li>
</ul>

Methods (by class)

This method gives the number of different gene groups in the object.

nGeneGroups: Get the number of gene groups in a pangenome

Description

Usage

Arguments

Value

Methods (by class)

Examples