nGenes

nGenes,pgVirtual-method

object


This method returns the total number of genes in a pangenome (i.e. the sum
of genes in each organism in the pangenome)


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

nGenes function

<ul>
<li> <code>pgVirtual</code>: The number of genes in the pangenome for pgVirtual 
subclasses.
</li>
</ul>

Methods (by class)

This method returns the total number of genes in a pangenome (i.e. the sum
of genes in each organism in the pangenome)

nGenes: Get the total number of genes in a pangenome

Description

Usage

Arguments

Value

Methods (by class)

Examples