nOrganisms

nOrganisms,pgVirtual-method

object


This method returns the current number of organisms in a pgVirtual 
subclass. This is also the result of calling <code>length()</code> on the object.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

nOrganisms function

<ul>
<li> <code>pgVirtual</code>: The number of organisms in the pangenome for pgVirtual
subclasses.
</li>
</ul>

Methods (by class)

This method returns the current number of organisms in a pgVirtual 
subclass. This is also the result of calling <code>length()</code> on the object.

nOrganisms: Get the number of organisms represented in a pangenome

Description

Usage

Arguments

Value

Methods (by class)

Examples