orgInfo

orgInfo,pgInMem-method

orgInfo<-

orgInfo<-,pgInMem-method

object

A data.frame with a row for each organism

value


These methods lets you access the information stored about each organism and
add to it or modify it. The only information present up front is the number 
of genes present in each organism. While possible, this information should 
not be changed manually but through the <code><a rd-options="" href="/link/removeGene?package=FindMyFriends&version=1.2.2" data-mini-rdoc="FindMyFriends::removeGene">removeGene</a></code> functions.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

orgInfo function

<ul>
<li> <code>pgInMem</code>: Get organism metadata for pgInMem subclasses </li>
<li> <code>pgInMem</code>: Set organism metadata for pgInMem subclasses
</li>
</ul>

Methods (by class)

These methods lets you access the information stored about each organism and
add to it or modify it. The only information present up front is the number 
of genes present in each organism. While possible, this information should 
not be changed manually but through the <code><a href="removeGene" rd-options="">removeGene</a></code> functions.

orgInfo: Get and set information about organisms

Description

Usage

Arguments

Value

Methods (by class)

See Also

Examples