pgInMemLoc-class


This virtual class is the superclass for all standard, location aware, 
pangenome classes in FindMyFriends. It stores all chromosomal information in
a data.frame.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

pgInMemLoc-class function

 <dl>
<dt><code>geneLocation</code></dt><dd>A data.frame containing the columns 'contig', 'start', 
'end' and 'strand' and a row for each gene in the pangenome.</dd> </dl>

Slots

This virtual class is the superclass for all standard, location aware, 
pangenome classes in FindMyFriends. It stores all chromosomal information in
a data.frame.

pgInMemLoc-class: Superclass for gene location aware pangenome

Description

Arguments

Slots

See Also