seqToOrg

seqToOrg,pgInMem-method

object


This method returns the organism membership for each gene in the pangenome as
a vector of indices. Element 1 corresponds to gene 1 and the value is the
index of the corresponding organism.


A framework for doing microbial comparative genomics in R.
The main purpose of the package is assisting in the creation of
pangenome matrices where genes from related organisms are
grouped by similarity, as well as the analysis of these data.
FindMyFriends provides many novel approaches to doing pangenome
analysis and supports a gene grouping algorithm that scales
linearly, thus making the creation of huge pangenomes feasible.

Thomas Pedersen

FindMyFriends

Microbial Comparative Genomics in R

seqToOrg function

<ul>
<li> <code>pgInMem</code>: Gene to organism indexing for pgInMem subclasses
</li>
</ul>

Methods (by class)

This method returns the organism membership for each gene in the pangenome as
a vector of indices. Element 1 corresponds to gene 1 and the value is the
index of the corresponding organism.

seqToOrg: Get gene-to-organism relationship

Description

Usage

Arguments

Value

Methods (by class)

See Also

Examples