# NOT RUN {
#Loading raster and viridis libraries
library(raster)
library(viridis)
# ALS-derived CHM from Fazenda Cauxi - Brazilian tropical forest
data(ALS_CHM_CAU_2012)
data(ALS_CHM_CAU_2014)
# set height thresholds (e.g. 10 meters)
threshold<-10
size<-c(1,10^4) # m2
# Detecting forest gaps
gaps_cau2012<-getForestGaps(chm_layer=ALS_CHM_CAU_2012, threshold=threshold, size=size)
gaps_cau2014<-getForestGaps(chm_layer=ALS_CHM_CAU_2014, threshold=threshold, size=size)
# Detecting forest gaps changes
Gap_changes<-GapChangeDec(gap_layer1=gaps_cau2012,gap_layer2=gaps_cau2014)
# Plotting ALS-derived CHM and forest gaps
par(mfrow=c(1,3))
plot(ALS_CHM_CAU_2012, main="Forest Canopy Gap - 2012", col=viridis(10))
plot(gaps_cau2012, add=TRUE, col="red", legend=FALSE)
plot(ALS_CHM_CAU_2014, main="Forest Canopy Gap - 2014", col=viridis(10))
plot(gaps_cau2014, add=TRUE,col="red", legend=FALSE)
plot(ALS_CHM_CAU_2014,main="Forest Gap Changes Detected",col=viridis(10))
plot(Gap_changes, add=TRUE, col="orange", legend=FALSE)
# }
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