SAtree

Converts a phylo object to SAtree, without modification of tip labels.

Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic
models of speciation, preservation and sampling.

Joelle Barido-Sottani

FossilSim

Simulation and Plots for Fossil and Taxonomy Data

Rachel Warnock

Walker Pett

O'Reilly Joseph

Ugnė Stolz

SAtree function

<dl><dt>tree</dt>
<dd>Phylo object.</dd>
<dt>complete</dt>
<dd>Whether the tree is complete. Default TRUE. If the tree is not complete, then all fossil tips correspond to fossil samples, otherwise only sampled ancestors are considered samples.</dd></dl>

Arguments

Tree with sampled ancestors represented as zero-length edges — SAtree

<dl>

<dt>tree</dt>
<dd>Phylo object.</dd>


<dt>complete</dt>
<dd>Whether the tree is complete. Default TRUE. If the tree is not complete, then all fossil tips correspond to fossil samples, otherwise only sampled ancestors are considered samples.</dd>

</dl>

SAtree: Tree with sampled ancestors represented as zero-length edges

Description

Usage

Arguments