Fragman (version 1.0.9)

homo.panel: complementary tools

Description

This functions takes a list of positions, heights and weights for ssr calls of a certain plant and uses panel information and a window to homogenize the weights of base pairs to the panel calls provided.

Usage

homo.panel(x, panel, window)

Arguments

x

list of positions, heights and weights

panel

different dna sizes usually obtained by using overview and locator functions

window

window in base pairs indicating when should be considered the same panel allele

Value

If arguments are correct the function returns a list containing

$pos

the index positions for the intensities

$hei

the intensities for the fragments found

$wei

the putative weights in base pairs based on the panel provided

Details

No major details.

References

Robert J. Henry. 2013. Molecular Markers in Plants. Wiley-Blackwell. ISBN 978-0-470-95951-0.

Ben Hui Liu. 1998. Statistical Genomics. CRC Press LLC. ISBN 0-8493-3166-8.

Examples

# NOT RUN {
#No example provided, internally working to round to the closest parent ssr call.
x <- 1:10

# }