plot.fsa_stored

an object of class <code>"fsa_stored"</code>

layout for the numberof plots to visualize.

if preferred a single channel can be specified.

channel

cex.legend

number of columns to divide the legend.

ncol.legend

equivalen to ylim argument in plot, xlim still can be used.

lims

specific colors to use in case the user don't want the default palete.

color

&#8230;

<code>plot</code> method for class <code>"fsa_stored"</code>.

models

Performs fragment analysis using genetic data coming from capillary electrophoresis machines. These are files with FSA extension which stands for FASTA-type file, and .txt files from Beckman CEQ 8000 system, both contain DNA fragment intensities read by machinery. In addition to visualization, it performs automatic scoring of SSRs (Sample Sequence Repeats; a type of genetic marker very common across the genome) and other type of PCR markers (standing for Polymerase Chain Reaction) in biparental populations such as F1, F2, BC (backcross), and diversity panels (collection of genetic diversity).

plot.fsa_stored: plot form fsa files stored with storing.inds

Description

Usage

Arguments

Value

See Also