GFM (version 1.2.1)

gfm: Generalized Factor Model

Description

This function is to implement the generalized factor model.

Usage

gfm(XList, types, q=10, offset=FALSE, dc_eps=1e-4, maxIter=30,
                verbose = TRUE, algorithm=c("VEM", "AM"))

Value

return a list with class name 'gfm' and including following components,

hH

a n*q matrix, the estimated factor matrix.

hB

a p*q matrix, the estimated loading matrix.

hmu

a p-dimensional vector, the estimated intercept terms.

obj

a real number, the value of objective function when the convergence achieves.

q

an integer, the used or estimated factor number.

history

a list including the following 7 components: (1)dB: the varied quantity of B in each iteration; (2)dH: the varied quantity of H in each iteration; (3)dc: the varied quantity of the objective function in each iteration; (4)c: the objective value in each iteration; (5) realIter: the real iterations to converge; (6)maxIter: the tolerance of maximum iterations; (7)elapsedTime: the elapsed time.

Arguments

XList

a list consisting of matrices with the same rows n, and different columns (p1,p2, ..., p_d),observational mixed data matrix list, d is the types of variables, p_j is the dimension of varibles with the j-th type.

types

a d-dimensional character vector, specify the type of variables. For example, types=c('gaussian','poisson', 'binomial'), implies the components of XList are matrices with continuous, count and binomial values, respectively.

q

a positive integer or empty, specify the number of factors, defualt as 10.

offset

a logical value, whether add an offset term (the total counts for each row in the count component of XList) when there are Poisson variables.

dc_eps

a positive real, specify the relative tolerance of objective function in the algorithm. Optional parameter with default as 1e-4.

maxIter

a positive integer, specify the times of iteration. Optional parameter with default as 30.

verbose

a logical value with TRUE or FALSE, specify whether ouput the information in iteration process, (optional) default as TRUE.

algorithm

a string, specify the algorithm to be used for fitting model. Now it supports two algorithms: variational EM (VEM) and alternate maximization (AM) algorithm, default as VEM. Empirically, we observed that VEM is more robust than AM to the high noise data.

Author

Liu Wei

Details

This function also has the MATLAB version at https://github.com/feiyoung/MGFM/blob/master/gfm.m.

References

Liu, W., Lin, H., Zheng, S., & Liu, J. (2021). Generalized factor model for ultra-high dimensional correlated variables with mixed types. Journal of the American Statistical Association, (just-accepted), 1-42.

Bai, J. and Liao, Y. (2013). Statistical inferences using large esti- mated covariances for panel data and factor models.

See Also

nothing

Examples

## mix of normal and Poisson

dat <- gendata(seed=1, n=60, p=60, type='norm_pois', q=2, rho=2)
## we set maxIter=2 for example.
gfm2 <- gfm(dat$XList,  dat$types,  q=2, verbose = FALSE, maxIter=2)
measurefun(gfm2$hH, dat$H0, type='ccor')
measurefun(gfm2$hB, dat$B0, type='ccor')