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GLAD (version 2.36.0)

Gain and Loss Analysis of DNA

Description

Analysis of array CGH data : detection of breakpoints in genomic profiles and assignment of a status (gain, normal or loss) to each chromosomal regions identified.

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Version

Version

2.36.0

License

GPL-2

Maintainer

Philippe Hupe

Last Published

February 15th, 2017

Functions in GLAD (2.36.0)

cytoband

Cytogenetic banding
arrayPersp

Perspective image of microarray spots statistic
ColorBar

Calibration bar for color images
myPalette

Microarray color palette
ChrNumeric

Convert chromosome into numeric values
tkdaglad

Graphical interface for GLAD package
glad

Analysis of array CGH data
array

Bladder cancer CGH data
kernelpen

Kernelpen function
GLAD-internal

GLAD-internal
profileCGH

Objects of Class profileCGH and profileChr
arrayPlot

Spatial image of microarray spots statistic
as.data.frame.profileCGH

profileCGH consercion
daglad

Analysis of array CGH data
snijders

Public CGH data of Snijders
arrayCGH

Object of Class arrayCGH
plotProfile

Plot genomic profile and cytogenetic banding
veltman

Public CGH data of Veltman
hclustglad

Hierarchical Clustering
as.profileCGH

Create an object of class profileCGH