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GMD (version 0.3.3)

Generalized Minimum Distance of distributions

Description

GMD is a package for non-parametric distance measurement between two discrete frequency distributions.

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Version

Install

install.packages('GMD')

Monthly Downloads

71

Version

0.3.3

License

GPL (>= 2)

Maintainer

Xiaobei Zhao

Last Published

December 27th, 2016

Functions in GMD (0.3.3)

bedgraph.to.depth

Convert a BedGraph fiel to a vector of depth-like signals
cage

CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags
equalize.list

Make members of a list equal size
chipseq

ChIP-seq data: ChIP-seq Enrichment around TSSs
gmdm

Generalized Minimum Distance Matrix
ghist

Generalized Histogram Computation
get.sep

Get row or column lines of separation for heatmap.3
GMD-package

The Package for Generalized Minimum Distance (GMD) Computation
elbow

The "Elbow" Method for Clustering Evaluation
css

Clustering Sum-of-Squares for clustering evaluation
plot.gmdp

Plot function for class gmdp
legend

Add Legends to Plots
plot.mhist

S3 method for class `mhist'.
plot.gmdm

S3 method for class `gmdm'
heatmap.3

Enhanced Heatmap Representation with Dendrogram and Partition
gmdp

Generalized Minimum Distance between a pair of distributions
ts2df

Convert time series to data frame
mhist.summary

Bin-wise summary of histograms
gdist

Generalized Distance Matrix Computation