GREP2 (version 1.0.2)

run_fastqc: QC report for each fastq files using FastQC

Description

run_fastqc HTML report of each fastq files using FastQC. You need to install FastQC from https://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Usage

run_fastqc(destdir, fastq_dir, n_thread)

Arguments

destdir

directory where all the results will be saved.

fastq_dir

directory of the fastq files.

n_thread

number of cores to use.

Value

HTML report of the fastq files under fastqc directory.

Examples

# NOT RUN {
fastq_dir=system.file("extdata","", package="GREP2")
# }
# NOT RUN {
run_fastqc(destdir=tempdir(),fastq_dir=fastq_dir,
n_thread=2)
# }
# NOT RUN {
# }