GREP2 (version 1.0.2)

run_multiqc: Generate combined QC report for Salmon and FastQC

Description

run_fastqc generates a single HTML report from the fastQC reports and salmon read mapping results using MultiQC.

Usage

run_multiqc(fastqc_dir, salmon_dir, destdir)

Arguments

fastqc_dir

directory where all the FastQC files are saved.

salmon_dir

directory of the salmon files.

destdir

directory where you want to save the combined QC report.

Value

HTML report.

References

Philip Ewels, Mans Magnusson, Sverker Lundin, and Max Kaller (2016): MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics, 32(19), 3047-3048. https://doi.org/10.1093/bioinformatics/btw354

Examples

# NOT RUN {
# }
# NOT RUN {
run_multiqc(fastqc_dir=tempdir(),salmon_dir=tempdir(),
destdir=tempdir())
# }
# NOT RUN {
# }