testdata


  A dummy dataset for testing these functions.  It contains
  two covariates (age and study), SNP data, and phenotype (coded 0/1).


datasets

GSAgm is an R package that completes a self-contained gene set analysis (GSA) for RNA-seq and SNP data using the Gamma Method.

Rama Raghavan

GSAgm

Gene Set Analysis using the Gamma Method

testdata function

A data frame with 150 observations on the following 18 variables.
  <dl>
    <dt><code>age</code></dt><dd>a numeric vector</dd> <dt><code>study</code></dt><dd>a factor with levels <code>AAA</code> <code>BBB</code> <code>CCC</code></dd> <dt><code>snp1</code></dt><dd>a numeric vector</dd> <dt><code>snp2</code></dt><dd>a numeric vector</dd> <dt><code>snp3</code></dt><dd>a numeric vector</dd> <dt><code>snp4</code></dt><dd>a numeric vector</dd> <dt><code>snp5</code></dt><dd>a numeric vector</dd> <dt><code>snp6</code></dt><dd>a numeric vector</dd> <dt><code>snp7</code></dt><dd>a numeric vector</dd> <dt><code>snp8</code></dt><dd>a numeric vector</dd> <dt><code>snp9</code></dt><dd>a numeric vector</dd> <dt><code>snp10</code></dt><dd>a numeric vector</dd> <dt><code>snp11</code></dt><dd>a numeric vector</dd> <dt><code>snp12</code></dt><dd>a numeric vector</dd> <dt><code>snp13</code></dt><dd>a numeric vector</dd> <dt><code>snp14</code></dt><dd>a numeric vector</dd> <dt><code>snp15</code></dt><dd>a numeric vector</dd> <dt><code>pheno</code></dt><dd>a numeric vector</dd> </dl> 

testdata: Test data

Description

Usage

Arguments

Format

Examples