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GenABEL (version 1.8-0)

arrange_probabel_phe: arranges ProbABEL phenotype-file

Description

Function to arrange ProbABEL phenotype-file; it takes phenotypic data as input and aligns that with genotypic data of ProbABEL

Usage

arrange_probabel_phe(modelterms, phedata, gendata, file = "probabel.PHE")

Arguments

modelterms
vector of character, which specifies the variables to be included into ProbABEL phenotype-file. Should contain, and start with 'id' column, which should provide the same ID codes as these in gendata
phedata
phenotypic data (matrix, data.frame, or gwaa.data-class object)
gendata
genetic data to be used with ProbABEL, either databel-class object or name of the (index/data) file containing filevector data for ProbABEL
file
name of the ProbABEL phenotype file

Value

file with phenotypes ready for use with ProbABEL