export.plink

GenABEL data object of 'gwaa.data'-class to
  be exported.

data

base file name for exported data,
  extensions '.ped', '.map' and '.phe' (for phenotype file)
  are added for specific output files.

filebasename

NULL (no phenotypes exported), "all"
  (default) for all phenotypes or a vector of character
  with names of phenotypes to be exported.

phenotypes

if TRUE (default), 'tped' files will be
  produced, else 'ped' files are produced.

transpose

if TRUE, export in numeric (0, 1, 2,
  NA) format, as opposed to ATGC format (default: FALSE).

export012na

arguments passed to
  <code><a rd-options="" href="/link/export.merlin?package=GenABEL&version=1.8-0" data-mini-rdoc="GenABEL::export.merlin">export.merlin</a></code>.


  Export GenABEL data in PLINK format. This function is a
  simple wrapper to the <code><a rd-options="" href="/link/export.merlin?package=GenABEL&version=1.8-0" data-mini-rdoc="GenABEL::export.merlin">export.merlin</a></code>
  function with specific arguments + few lines of code to
  export phenotypes


a package for genome-wide association analysis between
quantitative or binary traits and single-nucleotide
polymorphisms (SNPs).

Yurii Aulchenko

GenABEL

genome-wide SNP association analysis

export.plink function

arguments passed to
  <code><a rd-options='' href='export.merlin'>export.merlin</a></code>.


  Export GenABEL data in PLINK format. This function is a
  simple wrapper to the <code><a rd-options='' href='export.merlin'>export.merlin</a></code>
  function with specific arguments + few lines of code to
  export phenotypes


export.plink: Export GenABEL data in PLINK format

Description

Usage

Arguments