GenVisR (version 1.0.4)

TvTi_qual: Check input to TvTi

Description

Perform quality check for input to function TvTi

Usage

TvTi_qual(x, y = NULL, z = NULL, file_type = "MAF")

Arguments

x

Object of class data frame containing columns 'sample', reference', 'variant' for 'MGI' file or 'Tumor_Sample_Barcode', 'Reference_Allele', 'Tumor_Seq_Allele1', 'Tumor_Seq_Allele2' for 'MAF' file

y

Object of class data frame containing columns "Prop", "trans_tranv"

z

Object of class data frame containing columns "sample", "variable", "value" denoting clinical information

file_type

Character string spedifying th input file type expected

Value

a data frame, or list of data frames passing quality checks