GenVisR (version 1.0.4)

cnFreq_buildMain: Construct CN frequency plot

Description

given a data frame construct a plot to display proportions of losses and gains across the genome

Usage

cnFreq_buildMain(data_frame, plotType, plot_title = NULL, CN_low_colour = "#002EB8", CN_high_colour = "#A30000", x_lab_size = 12, y_lab_size = 12, facet_lab_size = 10, plotLayer = NULL)

Arguments

data_frame

object of class data frame containing columns chromosome, start, end, gain, and loss

plotType

character string to determine whether to plot proportions or frequencies

plot_title

character string for title of plot

CN_low_colour

character string specifying low value of colour gradient

CN_high_colour

character string specifying high value of colour gradient

x_lab_size

integer specifying the size of the X label

y_lab_size

integer specifying the size of the Y label

facet_lab_size

integer specifying the size of the faceted labels

plotLayer

Additional layer to be plotted, can be a theme but must be a ggplot layer

Value

ggplot object