Usage
cnSpec_buildMain(data_frame, dummy_data, plot_title = NULL, CN_low_colour = "#002EB8", CN_high_colour = "#A30000", x_lab_size = 12, y_lab_size = 12, facet_lab_size = 10, layers = NULL, CNscale = "absolute")
Arguments
data_frame
object of class data frame containing columns chromosome,
start, end, cn, sample
dummy_data
Object of class data frame containing columns chromosome,
start, end, cn, sample. Used for defining chromosome boundaries
plot_title
character string for title of plot
CN_low_colour
character string specifying low value of colour gradient
CN_high_colour
character string specifying high value of colour
gradient
x_lab_size
integer specifying the size of the X label
y_lab_size
integer specifying the size of the Y label
facet_lab_size
integer specifying the size of the faceted labels
layers
Additional layers to be plotted, can be a theme but must be a
ggplot layer
CNscale
Character string specifying if copy number calls supplied are
relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of
"relative" or "absolute"