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GenVisR (version 1.0.4)

cnSpec_qual: Construct CN cohort plot

Description

given a data frame construct a plot to display CN information for a group of samples

Usage

cnSpec_qual(x, y, genome, CNscale)

Arguments

x
object of class data frame containing columns chromosome, start, stop, segmean, sample
y
object of class data frame containing user supplied chromosome locations
genome
character string specifying a user supplied genome
CNscale
Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute"

Value

character string specifying input passed quality check