GenVisR (version 1.0.4)

cnView_qual: check input to cnView

Description

Perform a data quality check for inputs to cnView

Usage

cnView_qual(x, y, z, genome, CNscale)

Arguments

x

a data frame with columns chromosome, coordinate, cn

y

a data frame with columns "chrom", "chromStart", "chromEnd", "name", "gieStain"

z

a data frame with columns chromosome, start, end , segmean

genome

character string specifying UCSC genome to use

CNscale

Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute"

Value

a list of data frames passing quality checks