GenVisR (version 1.0.4)

compIdent_bamRcnt_qual: Count nucleotide reads at SNP locations

Description

Given the bam file path, count the number of reads at the 24 SNP locations

Usage

compIdent_bamRcnt_qual(genome, targetbed)

Arguments

genome

Object of class BSgenome corresponding to a genome of interest

targetbed

Object of class data frame containing target locations in .bed format

Value

list of data objects passing quality checks