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GenVisR (version 1.0.4)

geneViz_mapCovCoordSpace: Map coverage track regions to transformed space

Description

Reference a master genomic region file to map original positions of a coverage track to a transformed space

Usage

geneViz_mapCovCoordSpace(cov.coords, master)

Arguments

cov.coords
an object of class data frame containing columns start and end to map to transformed space, with rows demarking single nucleotide coverages
master
an object of class data frame containing columns start, end, width, type, trans_start, trans_end representing a master genomic region with features from isoforms merged

Value

an object of class data frame identical to coord but with extra columns for transformed coord