GenVisR (version 1.0.4)

lohSpec_qual: Check input to lohSpec

Description

Perform data quality checks on input supplied to lohSpec

Usage

lohSpec_qual(x, y, genome)

Arguments

x

object of class data frame with columns 'chromosome', 'position', 'n_vaf', 't_vaf', 'sample'

y

object of class data frame with columns 'chromosome', 'start', 'end' specifying chromosomal boundaries for a genome assembly (required if genome is not specified)

genome

character string specifying the genome assembly from which input data is based

Value

list of inputs passing basic quality controls